IL_8WHX_170

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8WHX|1|a|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_170 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.0807

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

8WHX|1|a|G|915
8WHX|1|a|C|916
8WHX|1|a|A|917
*
8WHX|1|a|U|1363
8WHX|1|a|U|1364
8WHX|1|a|C|1365
8WHX|1|a|C|1366
8WHX|1|a|C|1367

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S7

Chain w

Ribosome hibernation promotion factor RafH