IL_8WHX_194

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGGC*GAG

Length

7 nucleotides

Bulged bases

8WHX|1|a|G|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_194 not in the Motif Atlas

Geometric match to IL_7RQB_012

Geometric discrepancy: 0.1249

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8WHX|1|a|U|1423
8WHX|1|a|G|1424
8WHX|1|a|G|1425
8WHX|1|a|C|1426
*
8WHX|1|a|G|1443
8WHX|1|a|A|1444
8WHX|1|a|G|1445

Current chains

Chain a

16S rRNA

Nearby chains

Chain S

50S ribosomal protein L19

Chain u

30S ribosomal protein S20