IL_8WHX_199

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGGCC*GGUUAC

Length

11 nucleotides

Bulged bases

8WHX|1|A|A|1011

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHX_199 not in the Motif Atlas

Geometric match to IL_8C3A_102

Geometric discrepancy: 0.3422

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8WHX|1|A|G|996
8WHX|1|A|G|997
8WHX|1|A|G|998
8WHX|1|A|C|999
8WHX|1|A|C|1000
*
8WHX|1|A|G|1007
8WHX|1|A|G|1008
8WHX|1|A|U|1009
8WHX|1|A|U|1010
8WHX|1|A|A|1011
8WHX|1|A|C|1012

Current chains

Chain A

23S rRNA

Nearby chains