IL_8WHY_032

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCUACU*AAAC

Length

10 nucleotides

Bulged bases

8WHY|1|A|U|981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_032 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.1191

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

8WHY|1|A|G|979
8WHY|1|A|C|980
8WHY|1|A|U|981
8WHY|1|A|A|982
8WHY|1|A|C|983
8WHY|1|A|U|984
*
8WHY|1|A|A|1024
8WHY|1|A|A|1025
8WHY|1|A|A|1026
8WHY|1|A|C|1027

Current chains

Chain A

23S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA