IL_8WHY_075

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8WHY|1|A|G|2018, 8WHY|1|A|U|2033, 8WHY|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_075 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0825

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8WHY|1|A|U|2015
8WHY|1|A|G|2016
8WHY|1|A|C|2017
8WHY|1|A|G|2018
8WHY|1|A|A|2019
8WHY|1|A|A|2020
8WHY|1|A|G|2021
*
8WHY|1|A|C|2030
8WHY|1|A|G|2031
8WHY|1|A|A|2032
8WHY|1|A|U|2033
8WHY|1|A|G|2034
8WHY|1|A|U|2035
8WHY|1|A|A|2036
8WHY|1|A|U|2037
8WHY|1|A|A|2038

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2