IL_8WHY_103

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8WHY|1|A|A|2721

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_103 not in the Motif Atlas

Geometric match to IL_7RQB_111

Geometric discrepancy: 0.3609

The information below is about IL_7RQB_111

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_37497.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

118

Unit IDs

8WHY|1|A|G|2678
8WHY|1|A|G|2679
*
8WHY|1|A|C|2720
8WHY|1|A|A|2721
8WHY|1|A|C|2722

Current chains

Chain A

23S rRNA

Nearby chains

Chain F

50S ribosomal protein L3