IL_8WHY_105

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

8WHY|1|A|U|2715

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WHY_105 not in the Motif Atlas

Geometric match to IL_5J7L_337

Geometric discrepancy: 0.2912

The information below is about IL_5J7L_337

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

8WHY|1|A|A|2683
8WHY|1|A|U|2684
8WHY|1|A|C|2685
*
8WHY|1|A|G|2713
8WHY|1|A|G|2714
8WHY|1|A|U|2715
8WHY|1|A|U|2716
8WHY|1|A|U|2717

Current chains

Chain A

23S rRNA

Nearby chains