IL_8WI7_013

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

8WI7|1|A|G|591, 8WI7|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_013 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.1989

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

8WI7|1|A|G|569
8WI7|1|A|U|570
8WI7|1|A|A|571
8WI7|1|A|C|572
*
8WI7|1|A|G|583
8WI7|1|A|A|584
8WI7|1|A|G|585
8WI7|1|A|U|586
8WI7|1|A|G|587
8WI7|1|A|A|588
8WI7|1|A|A|589
8WI7|1|A|A|590
8WI7|1|A|G|591
8WI7|1|A|A|592
8WI7|1|A|G|593
8WI7|1|A|U|594
8WI7|1|A|A|595
8WI7|1|A|C|596

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain X

50S ribosomal protein L24