IL_8WI7_020

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8WI7|1|A|G|916, 8WI7|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_020 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.146

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8WI7|1|A|G|789
8WI7|1|A|A|790
8WI7|1|A|A|791
8WI7|1|A|G|792
8WI7|1|A|C|793
*
8WI7|1|A|G|914
8WI7|1|A|U|915
8WI7|1|A|G|916
8WI7|1|A|A|917
8WI7|1|A|U|918
8WI7|1|A|A|919
8WI7|1|A|G|920
8WI7|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15