IL_8WI7_029

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGGUAG*CGAAUGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_029 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.1196

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8WI7|1|A|G|971
8WI7|1|A|A|972
8WI7|1|A|G|973
8WI7|1|A|G|974
8WI7|1|A|U|975
8WI7|1|A|A|976
8WI7|1|A|G|977
*
8WI7|1|A|C|1030
8WI7|1|A|G|1031
8WI7|1|A|A|1032
8WI7|1|A|A|1033
8WI7|1|A|U|1034
8WI7|1|A|G|1035
8WI7|1|A|C|1036

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain B

5S ribosomal RNA; 5S rRNA

Chain Z

50S ribosomal protein L27