IL_8WI7_035

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGC*GUUAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_035 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2479

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8WI7|1|A|G|996
8WI7|1|A|G|997
8WI7|1|A|G|998
8WI7|1|A|C|999
*
8WI7|1|A|G|1008
8WI7|1|A|U|1009
8WI7|1|A|U|1010
8WI7|1|A|A|1011
8WI7|1|A|C|1012

Current chains

Chain A

23S rRNA

Nearby chains