IL_8WI7_113

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_113 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.2582

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

8WI7|1|A|C|2876
8WI7|1|A|U|2877
8WI7|1|A|A|2878
8WI7|1|A|G|2879
8WI7|1|A|U|2880
8WI7|1|A|A|2881
8WI7|1|A|C|2882
*
8WI7|1|A|G|2887
8WI7|1|A|G|2888
8WI7|1|A|A|2889
8WI7|1|A|C|2890
8WI7|1|A|C|2891
8WI7|1|A|G|2892

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6