IL_8WI7_183

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8WI7|1|a|C|1383, 8WI7|1|a|A|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI7_183 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2319

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8WI7|1|a|C|1382
8WI7|1|a|C|1383
8WI7|1|a|G|1384
*
8WI7|1|a|C|1485
8WI7|1|a|A|1486
8WI7|1|a|A|1487
8WI7|1|a|G|1488

Current chains

Chain a

16S rRNA

Nearby chains

Chain v

30S ribosomal protein S22

Chain w

Ribosome hibernation promotion factor RafH