IL_8WI9_038
3D structure
- PDB id
- 8WI9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WI9_038 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.0775
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8WI9|1|a|G|869
8WI9|1|a|G|870
8WI9|1|a|A|871
8WI9|1|a|G|872
8WI9|1|a|U|873
8WI9|1|a|A|874
8WI9|1|a|C|875
8WI9|1|a|G|876
*
8WI9|1|a|U|887
8WI9|1|a|A|888
8WI9|1|a|A|889
8WI9|1|a|A|890
8WI9|1|a|A|891
8WI9|1|a|C|892
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain m
- 30S ribosomal protein S12
- Chain v
- 30S ribosomal protein S22
Coloring options: