IL_8WI9_064

3D structure

PDB id

8WI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGAAG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WI9_064 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2454

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8WI9|1|a|C|1413
8WI9|1|a|C|1414
8WI9|1|a|G|1415
8WI9|1|a|A|1416
8WI9|1|a|A|1417
8WI9|1|a|G|1418
*
8WI9|1|a|C|1450
8WI9|1|a|G|1451
8WI9|1|a|A|1452
8WI9|1|a|A|1453
8WI9|1|a|G|1454

Current chains

Chain a

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S20