IL_8WIB_014

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

8WIB|1|A|G|591, 8WIB|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_014 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.196

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

8WIB|1|A|G|569
8WIB|1|A|U|570
8WIB|1|A|A|571
8WIB|1|A|C|572
*
8WIB|1|A|G|583
8WIB|1|A|A|584
8WIB|1|A|G|585
8WIB|1|A|U|586
8WIB|1|A|G|587
8WIB|1|A|A|588
8WIB|1|A|A|589
8WIB|1|A|A|590
8WIB|1|A|G|591
8WIB|1|A|A|592
8WIB|1|A|G|593
8WIB|1|A|U|594
8WIB|1|A|A|595
8WIB|1|A|C|596

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain X

50S ribosomal protein L24