IL_8WIB_021

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8WIB|1|A|G|916, 8WIB|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_021 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1457

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8WIB|1|A|G|789
8WIB|1|A|A|790
8WIB|1|A|A|791
8WIB|1|A|G|792
8WIB|1|A|C|793
*
8WIB|1|A|G|914
8WIB|1|A|U|915
8WIB|1|A|G|916
8WIB|1|A|A|917
8WIB|1|A|U|918
8WIB|1|A|A|919
8WIB|1|A|G|920
8WIB|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15