IL_8WIB_070

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUGG*UGAG

Length

9 nucleotides

Bulged bases

8WIB|1|A|U|1932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_070 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.2514

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8WIB|1|A|C|1930
8WIB|1|A|A|1931
8WIB|1|A|U|1932
8WIB|1|A|G|1933
8WIB|1|A|G|1934
*
8WIB|1|A|U|1960
8WIB|1|A|G|1961
8WIB|1|A|A|1962
8WIB|1|A|G|1963

Current chains

Chain A

23S rRNA

Nearby chains