IL_8WIB_074

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8WIB|1|A|G|2018, 8WIB|1|A|U|2033, 8WIB|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_074 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0915

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8WIB|1|A|U|2015
8WIB|1|A|G|2016
8WIB|1|A|C|2017
8WIB|1|A|G|2018
8WIB|1|A|A|2019
8WIB|1|A|A|2020
8WIB|1|A|G|2021
*
8WIB|1|A|C|2030
8WIB|1|A|G|2031
8WIB|1|A|A|2032
8WIB|1|A|U|2033
8WIB|1|A|G|2034
8WIB|1|A|U|2035
8WIB|1|A|A|2036
8WIB|1|A|U|2037
8WIB|1|A|A|2038

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA