IL_8WIB_093

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

8WIB|1|A|U|2390, 8WIB|1|A|U|2395

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_093 not in the Motif Atlas

Geometric match to IL_5J7L_329

Geometric discrepancy: 0.3327

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

8WIB|1|A|G|2347
8WIB|1|A|G|2348
8WIB|1|A|A|2349
8WIB|1|A|G|2350
8WIB|1|A|A|2351
*
8WIB|1|A|U|2383
8WIB|1|A|C|2384
8WIB|1|A|G|2385
8WIB|1|A|U|2386
8WIB|1|A|U|2387
8WIB|1|A|G|2388
8WIB|1|A|U|2389
8WIB|1|A|U|2390
8WIB|1|A|G|2391
8WIB|1|A|A|2392
8WIB|1|A|A|2393
8WIB|1|A|A|2394
8WIB|1|A|U|2395
8WIB|1|A|A|2396
8WIB|1|A|C|2397

Current chains

Chain A

23S rRNA

Nearby chains