IL_8WIB_177
3D structure
- PDB id
- 8WIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UACAAAG*UUUCAAAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WIB_177 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.4263
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8WIB|1|a|U|1228
8WIB|1|a|A|1229
8WIB|1|a|C|1230
8WIB|1|a|A|1231
8WIB|1|a|A|1232
8WIB|1|a|A|1233
8WIB|1|a|G|1234
*
8WIB|1|a|U|1265
8WIB|1|a|U|1266
8WIB|1|a|U|1267
8WIB|1|a|C|1268
8WIB|1|a|A|1269
8WIB|1|a|A|1270
8WIB|1|a|A|1271
8WIB|1|a|G|1272
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S7
- Chain j
- 30S ribosomal protein S9
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14A
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