IL_8WIB_188
3D structure
- PDB id
- 8WIB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCGAAG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WIB_188 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.2519
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8WIB|1|a|C|1413
8WIB|1|a|C|1414
8WIB|1|a|G|1415
8WIB|1|a|A|1416
8WIB|1|a|A|1417
8WIB|1|a|G|1418
*
8WIB|1|a|C|1450
8WIB|1|a|G|1451
8WIB|1|a|A|1452
8WIB|1|a|A|1453
8WIB|1|a|G|1454
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 50S ribosomal protein L19
- Chain u
- 30S ribosomal protein S20
Coloring options: