IL_8WIB_202

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

8WIB|1|A|A|1011

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIB_202 not in the Motif Atlas

Geometric match to IL_8P9A_456

Geometric discrepancy: 0.2067

The information below is about IL_8P9A_456

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8WIB|1|A|G|996
8WIB|1|A|G|997
8WIB|1|A|G|998
*
8WIB|1|A|U|1009
8WIB|1|A|U|1010
8WIB|1|A|A|1011
8WIB|1|A|C|1012

Current chains

Chain A

23S rRNA

Nearby chains