IL_8WIC_014

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUAC*GAGUGAAAGAGUAC

Length

18 nucleotides

Bulged bases

8WIC|1|A|G|591, 8WIC|1|A|A|595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_014 not in the Motif Atlas

Homologous match to IL_4WF9_015

Geometric discrepancy: 0.196

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

8WIC|1|A|G|569
8WIC|1|A|U|570
8WIC|1|A|A|571
8WIC|1|A|C|572
*
8WIC|1|A|G|583
8WIC|1|A|A|584
8WIC|1|A|G|585
8WIC|1|A|U|586
8WIC|1|A|G|587
8WIC|1|A|A|588
8WIC|1|A|A|589
8WIC|1|A|A|590
8WIC|1|A|G|591
8WIC|1|A|A|592
8WIC|1|A|G|593
8WIC|1|A|U|594
8WIC|1|A|A|595
8WIC|1|A|C|596

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain X

50S ribosomal protein L24