IL_8WIC_021

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGC*GUGAUAGC

Length

13 nucleotides

Bulged bases

8WIC|1|A|G|916, 8WIC|1|A|G|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_021 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1457

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8WIC|1|A|G|789
8WIC|1|A|A|790
8WIC|1|A|A|791
8WIC|1|A|G|792
8WIC|1|A|C|793
*
8WIC|1|A|G|914
8WIC|1|A|U|915
8WIC|1|A|G|916
8WIC|1|A|A|917
8WIC|1|A|U|918
8WIC|1|A|A|919
8WIC|1|A|G|920
8WIC|1|A|C|921

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain O

50S ribosomal protein L15