IL_8WIC_026

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

8WIC|1|A|G|891, 8WIC|1|A|A|903, 8WIC|1|A|A|904

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_026 not in the Motif Atlas

Homologous match to IL_5J7L_265

Geometric discrepancy: 0.0829

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8WIC|1|A|G|890
8WIC|1|A|G|891
8WIC|1|A|G|892
*
8WIC|1|A|C|902
8WIC|1|A|A|903
8WIC|1|A|A|904
8WIC|1|A|U|905
8WIC|1|A|C|906

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain E

50S ribosomal protein L2

Chain V

50S ribosomal protein L22