IL_8WIC_028

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGU*AGAG

Length

7 nucleotides

Bulged bases

8WIC|1|A|G|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_028 not in the Motif Atlas

Geometric match to IL_4V88_406

Geometric discrepancy: 0.2652

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8WIC|1|A|U|959
8WIC|1|A|G|960
8WIC|1|A|U|961
*
8WIC|1|A|A|1048
8WIC|1|A|G|1049
8WIC|1|A|A|1050
8WIC|1|A|G|1051

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30