IL_8WIC_030

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAGGUAG*CGAAUGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_030 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.1108

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8WIC|1|A|G|971
8WIC|1|A|A|972
8WIC|1|A|G|973
8WIC|1|A|G|974
8WIC|1|A|U|975
8WIC|1|A|A|976
8WIC|1|A|G|977
*
8WIC|1|A|C|1030
8WIC|1|A|G|1031
8WIC|1|A|A|1032
8WIC|1|A|A|1033
8WIC|1|A|U|1034
8WIC|1|A|G|1035
8WIC|1|A|C|1036

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain B

5S ribosomal RNA; 5S rRNA

Chain Z

50S ribosomal protein L27