IL_8WIC_036

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGC*GUUAC

Length

9 nucleotides

Bulged bases

8WIC|1|A|A|1011

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_036 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.242

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8WIC|1|A|G|996
8WIC|1|A|G|997
8WIC|1|A|G|998
8WIC|1|A|C|999
*
8WIC|1|A|G|1008
8WIC|1|A|U|1009
8WIC|1|A|U|1010
8WIC|1|A|A|1011
8WIC|1|A|C|1012

Current chains

Chain A

23S rRNA

Nearby chains