IL_8WIC_047

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8WIC|1|A|U|1325

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_047 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.1396

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8WIC|1|A|C|1322
8WIC|1|A|G|1323
8WIC|1|A|G|1324
8WIC|1|A|U|1325
8WIC|1|A|G|1326
8WIC|1|A|A|1327
8WIC|1|A|A|1328
8WIC|1|A|G|1329
*
8WIC|1|A|U|1349
8WIC|1|A|G|1350
8WIC|1|A|G|1351
8WIC|1|A|A|1352
8WIC|1|A|G|1353

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L20