IL_8WIC_058

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

8WIC|1|A|U|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_058 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.233

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

8WIC|1|A|C|1638
8WIC|1|A|G|1639
8WIC|1|A|A|1640
8WIC|1|A|U|1641
8WIC|1|A|G|1642
*
8WIC|1|A|C|1797
8WIC|1|A|U|1798
8WIC|1|A|A|1799
8WIC|1|A|G|1800

Current chains

Chain A

23S rRNA

Nearby chains