IL_8WIC_074

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

8WIC|1|A|G|2018, 8WIC|1|A|U|2033, 8WIC|1|A|U|2037

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_074 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0915

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8WIC|1|A|U|2015
8WIC|1|A|G|2016
8WIC|1|A|C|2017
8WIC|1|A|G|2018
8WIC|1|A|A|2019
8WIC|1|A|A|2020
8WIC|1|A|G|2021
*
8WIC|1|A|C|2030
8WIC|1|A|G|2031
8WIC|1|A|A|2032
8WIC|1|A|U|2033
8WIC|1|A|G|2034
8WIC|1|A|U|2035
8WIC|1|A|A|2036
8WIC|1|A|U|2037
8WIC|1|A|A|2038

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2