IL_8WIC_078

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_078 not in the Motif Atlas

Homologous match to IL_7RQB_074

Geometric discrepancy: 0.1729

The information below is about IL_7RQB_074

Detailed Annotation

UAA/GAN with extra pair

Broad Annotation

No text annotation

Motif group

IL_90318.1

Basepair signature

cWW-tSH-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

8WIC|1|A|U|2068
8WIC|1|A|U|2069
8WIC|1|A|A|2070
8WIC|1|A|A|2071
8WIC|1|A|G|2072
*
8WIC|1|A|U|2111
8WIC|1|A|U|2112
8WIC|1|A|A|2113
8WIC|1|A|A|2114
8WIC|1|A|G|2115

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Transfer RNA; tRNA