IL_8WIC_079

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGGACC*GAGAAU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_079 not in the Motif Atlas

Geometric match to IL_4V88_421

Geometric discrepancy: 0.2603

The information below is about IL_4V88_421

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared related

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8WIC|1|A|A|2073
8WIC|1|A|G|2074
8WIC|1|A|G|2075
8WIC|1|A|A|2076
8WIC|1|A|C|2077
8WIC|1|A|C|2078
*
8WIC|1|A|G|2105
8WIC|1|A|A|2106
8WIC|1|A|G|2107
8WIC|1|A|A|2108
8WIC|1|A|A|2109
8WIC|1|A|U|2110

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Transfer RNA; tRNA