IL_8WIC_084

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

8WIC|1|A|C|2279, 8WIC|1|A|U|2837, 8WIC|1|A|A|2838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_084 not in the Motif Atlas

Homologous match to IL_4WF9_079

Geometric discrepancy: 0.1093

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

8WIC|1|A|A|2278
8WIC|1|A|C|2279
8WIC|1|A|G|2280
*
8WIC|1|A|C|2836
8WIC|1|A|U|2837
8WIC|1|A|A|2838
8WIC|1|A|U|2839

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain F

50S ribosomal protein L3

Chain V

50S ribosomal protein L22