IL_8WIC_093

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAGA*UCGUUGUUGAAAUAC

Length

20 nucleotides

Bulged bases

8WIC|1|A|U|2390, 8WIC|1|A|U|2395

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_093 not in the Motif Atlas

Geometric match to IL_5J7L_329

Geometric discrepancy: 0.3327

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

8WIC|1|A|G|2347
8WIC|1|A|G|2348
8WIC|1|A|A|2349
8WIC|1|A|G|2350
8WIC|1|A|A|2351
*
8WIC|1|A|U|2383
8WIC|1|A|C|2384
8WIC|1|A|G|2385
8WIC|1|A|U|2386
8WIC|1|A|U|2387
8WIC|1|A|G|2388
8WIC|1|A|U|2389
8WIC|1|A|U|2390
8WIC|1|A|G|2391
8WIC|1|A|A|2392
8WIC|1|A|A|2393
8WIC|1|A|A|2394
8WIC|1|A|U|2395
8WIC|1|A|A|2396
8WIC|1|A|C|2397

Current chains

Chain A

23S rRNA

Nearby chains