IL_8WIC_112

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIC_112 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.2504

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8WIC|1|A|C|2876
8WIC|1|A|U|2877
8WIC|1|A|A|2878
8WIC|1|A|G|2879
8WIC|1|A|U|2880
8WIC|1|A|A|2881
8WIC|1|A|C|2882
*
8WIC|1|A|G|2887
8WIC|1|A|G|2888
8WIC|1|A|A|2889
8WIC|1|A|C|2890
8WIC|1|A|C|2891
8WIC|1|A|G|2892

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L6