IL_8WID_032

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGGG*UGGG

Length

9 nucleotides

Bulged bases

8WID|1|a|G|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WID_032 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.071

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8WID|1|a|C|642
8WID|1|a|A|643
8WID|1|a|G|644
8WID|1|a|G|645
8WID|1|a|G|646
*
8WID|1|a|U|720
8WID|1|a|G|721
8WID|1|a|G|722
8WID|1|a|G|723

Current chains

Chain a

16S rRNA

Nearby chains

Chain g

30S ribosomal protein S6

Chain p

30S ribosomal protein S15

Chain s

30S ribosomal protein S18B