IL_8WID_033
3D structure
- PDB id
- 8WID (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGAAUU*AGGAAC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WID_033 not in the Motif Atlas
- Homologous match to IL_4LFB_030
- Geometric discrepancy: 0.0709
- The information below is about IL_4LFB_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
8WID|1|a|G|653
8WID|1|a|G|654
8WID|1|a|A|655
8WID|1|a|A|656
8WID|1|a|U|657
8WID|1|a|U|658
*
8WID|1|a|A|692
8WID|1|a|G|693
8WID|1|a|G|694
8WID|1|a|A|695
8WID|1|a|A|696
8WID|1|a|C|697
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S6
- Chain l
- 30S ribosomal protein S11
- Chain s
- 30S ribosomal protein S18B
Coloring options: