3D structure

PDB id
8WID (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GG*UCAUC
Length
7 nucleotides
Bulged bases
8WID|1|a|C|1181, 8WID|1|a|A|1182
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8WID_046 not in the Motif Atlas
Homologous match to IL_5J7L_048
Geometric discrepancy: 0.1088
The information below is about IL_5J7L_048
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_95583.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
11

Unit IDs

8WID|1|a|G|1037
8WID|1|a|G|1038
*
8WID|1|a|U|1180
8WID|1|a|C|1181
8WID|1|a|A|1182
8WID|1|a|U|1183
8WID|1|a|C|1184

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S3
Chain k
30S ribosomal protein S10
Chain o
30S ribosomal protein S14A

Coloring options:


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