IL_8WID_049

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUGC*GGACUC

Length

11 nucleotides

Bulged bases

8WID|1|a|U|1106

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WID_049 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.4436

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

8WID|1|a|G|1104
8WID|1|a|U|1105
8WID|1|a|U|1106
8WID|1|a|G|1107
8WID|1|a|C|1108
*
8WID|1|a|G|1125
8WID|1|a|G|1126
8WID|1|a|A|1127
8WID|1|a|C|1128
8WID|1|a|U|1129
8WID|1|a|C|1130

Current chains

Chain a

16S rRNA

Nearby chains

Chain j

30S ribosomal protein S9

Chain k

30S ribosomal protein S10