3D structure

PDB id
8WID (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCUG*CGAAUC
Length
10 nucleotides
Bulged bases
8WID|1|a|U|1238, 8WID|1|a|A|1261
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8WID_053 not in the Motif Atlas
Homologous match to IL_4LFB_052
Geometric discrepancy: 0.1094
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

8WID|1|a|G|1236
8WID|1|a|C|1237
8WID|1|a|U|1238
8WID|1|a|G|1239
*
8WID|1|a|C|1258
8WID|1|a|G|1259
8WID|1|a|A|1260
8WID|1|a|A|1261
8WID|1|a|U|1262
8WID|1|a|C|1263

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S3
Chain k
30S ribosomal protein S10
Chain o
30S ribosomal protein S14A

Coloring options:


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