IL_8WID_053
3D structure
- PDB id
- 8WID (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GCUG*CGAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8WID|1|a|U|1238, 8WID|1|a|A|1261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WID_053 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.1094
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8WID|1|a|G|1236
8WID|1|a|C|1237
8WID|1|a|U|1238
8WID|1|a|G|1239
*
8WID|1|a|C|1258
8WID|1|a|G|1259
8WID|1|a|A|1260
8WID|1|a|A|1261
8WID|1|a|U|1262
8WID|1|a|C|1263
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14A
Coloring options: