IL_8WID_055

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WID_055 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0993

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8WID|1|a|C|1285
8WID|1|a|G|1286
8WID|1|a|G|1287
8WID|1|a|A|1288
8WID|1|a|U|1289
8WID|1|a|C|1290
*
8WID|1|a|G|1311
8WID|1|a|U|1312
8WID|1|a|G|1313
8WID|1|a|A|1314
8WID|1|a|A|1315
8WID|1|a|G|1316

Current chains

Chain a

16S rRNA

Nearby chains

Chain n

30S ribosomal protein S13