IL_8WID_065

3D structure

PDB id

8WID (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGC*GAG

Length

7 nucleotides

Bulged bases

8WID|1|a|G|1425

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WID_065 not in the Motif Atlas

Geometric match to IL_7RQB_012

Geometric discrepancy: 0.1342

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8WID|1|a|U|1423
8WID|1|a|G|1424
8WID|1|a|G|1425
8WID|1|a|C|1426
*
8WID|1|a|G|1443
8WID|1|a|A|1444
8WID|1|a|G|1445

Current chains

Chain a

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S20