IL_8WIF_011

3D structure

PDB id

8WIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGAUAAG*UCUAAUAC

Length

15 nucleotides

Bulged bases

8WIF|1|a|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIF_011 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1033

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

8WIF|1|a|G|144
8WIF|1|a|G|145
8WIF|1|a|A|146
8WIF|1|a|U|147
8WIF|1|a|A|148
8WIF|1|a|A|149
8WIF|1|a|G|150
*
8WIF|1|a|U|165
8WIF|1|a|C|166
8WIF|1|a|U|167
8WIF|1|a|A|168
8WIF|1|a|A|169
8WIF|1|a|U|170
8WIF|1|a|A|171
8WIF|1|a|C|172

Current chains

Chain a

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S20