IL_8WIF_041
3D structure
- PDB id
- 8WIF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCA*UUCCC
- Length
- 8 nucleotides
- Bulged bases
- 8WIF|1|a|C|916
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WIF_041 not in the Motif Atlas
- Homologous match to IL_5J7L_041
- Geometric discrepancy: 0.0819
- The information below is about IL_5J7L_041
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.3
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
8WIF|1|a|G|915
8WIF|1|a|C|916
8WIF|1|a|A|917
*
8WIF|1|a|U|1363
8WIF|1|a|U|1364
8WIF|1|a|C|1365
8WIF|1|a|C|1366
8WIF|1|a|C|1367
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain h
- 30S ribosomal protein S7
- Chain j
- 30S ribosomal protein S9
- Chain w
- Ribosome hibernation promotion factor RafH
Coloring options: