IL_8WIF_045
3D structure
- PDB id
- 8WIF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 8WIF|1|a|C|1034
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WIF_045 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.3156
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
8WIF|1|a|G|1031
8WIF|1|a|U|1032
8WIF|1|a|G|1033
8WIF|1|a|C|1034
8WIF|1|a|A|1035
8WIF|1|a|U|1036
*
8WIF|1|a|A|1185
8WIF|1|a|U|1186
8WIF|1|a|G|1187
8WIF|1|a|C|1188
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain k
- 30S ribosomal protein S10
- Chain o
- 30S ribosomal protein S14A
- Chain w
- Ribosome hibernation promotion factor RafH
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