3D structure

PDB id
8WIF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUGCAU*AUGC
Length
10 nucleotides
Bulged bases
8WIF|1|a|C|1034
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8WIF_045 not in the Motif Atlas
Geometric match to IL_4V88_473
Geometric discrepancy: 0.3156
The information below is about IL_4V88_473
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

8WIF|1|a|G|1031
8WIF|1|a|U|1032
8WIF|1|a|G|1033
8WIF|1|a|C|1034
8WIF|1|a|A|1035
8WIF|1|a|U|1036
*
8WIF|1|a|A|1185
8WIF|1|a|U|1186
8WIF|1|a|G|1187
8WIF|1|a|C|1188

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S3
Chain k
30S ribosomal protein S10
Chain o
30S ribosomal protein S14A
Chain w
Ribosome hibernation promotion factor RafH

Coloring options:


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