IL_8WIF_056

3D structure

PDB id

8WIF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

8WIF|1|a|C|1383, 8WIF|1|a|A|1487

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WIF_056 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0872

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8WIF|1|a|C|1382
8WIF|1|a|C|1383
8WIF|1|a|G|1384
*
8WIF|1|a|C|1485
8WIF|1|a|A|1486
8WIF|1|a|A|1487
8WIF|1|a|G|1488

Current chains

Chain a

16S rRNA

Nearby chains

Chain v

30S ribosomal protein S22

Chain w

Ribosome hibernation promotion factor RafH