IL_8WV1_004
3D structure
- PDB id
- 8WV1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.99 Å
Loop
- Sequence
- GGAACUG*CUCAGUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8WV1_004 not in the Motif Atlas
- Homologous match to IL_5J7L_250
- Geometric discrepancy: 0.1531
- The information below is about IL_5J7L_250
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8WV1|1|A|G|177
8WV1|1|A|G|178
8WV1|1|A|A|179
8WV1|1|A|A|180
8WV1|1|A|C|181
8WV1|1|A|U|182
8WV1|1|A|G|183
*
8WV1|1|A|C|190
8WV1|1|A|U|191
8WV1|1|A|C|192
8WV1|1|A|A|193
8WV1|1|A|G|194
8WV1|1|A|U|195
8WV1|1|A|A|196
8WV1|1|A|C|197
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 2
- 50S ribosomal protein L34
- Chain 3
- 50S ribosomal protein L35
- Chain K
- 50S ribosomal protein L15
- Chain W
- Large ribosomal subunit protein bL28
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