IL_8WV1_024

3D structure

PDB id

8WV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ambient Temperature Structure of 50S Ribosomal Subunit from Thermus Thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.99 Å

Loop

Sequence

GAUA*UGUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8WV1_024 not in the Motif Atlas

Geometric match to IL_7KJT_003

Geometric discrepancy: 0.3264

The information below is about IL_7KJT_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

56

Unit IDs

8WV1|1|A|G|916
8WV1|1|A|A|917
8WV1|1|A|U|918
8WV1|1|A|A|919
*
8WV1|1|A|U|951
8WV1|1|A|G|952
8WV1|1|A|U|953
8WV1|1|A|C|954

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L16

Chain U

50S ribosomal protein L25